PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000120013
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 263aa    MW: 29484.4 Da    PI: 8.0194
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000120013genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002979101123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C k F ++  L  H++ H
  MDP0000120013  79 FECQYCFKEFANSQALGGHQNAH 101
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.0E-575105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.51E-675106No hitNo description
PROSITE profilePS5015711.40679106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MQSETNTVGA CAEKKLRLFG FELNPNRNEE TSMKGGRSAA EGGGDESVNS SNSVSHPIKL  60
ERYRENEKSS TSEPDDKKFE CQYCFKEFAN SQALGGHQNA HKKERMKKKR LQLQARKASI  120
NYYLQPFQTF HHHGSTVAPS WFYDPSSYLN PDHPFTLHEE SQISFNSFDQ SYGPSSGSHS  180
QVSNWYSVPP QQQFPSSQTG EQDHVINPNK FTLTQTDRSG ESRPIVFTPS PLSASTQQSC  240
KPLDLQLGLG VPSKIQRSSR SEA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.169820.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008353004.10.0PREDICTED: zinc finger protein 5-like
SwissprotQ392641e-17ZFP5_ARATH; Zinc finger protein 5
TrEMBLD9ZIT21e-153D9ZIT2_MALDO; C2H2L domain class transcription factor
STRINGVIT_01s0026g00850.t012e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.17e-18zinc finger protein 5